FSL is a comprehensive library of analysis tools for FMRI, MRI and diffusion brain imaging data. It runs on macOS (Intel and M1/M2/M3), Linux, and Windows via the Windows Subsystem for …

Learn the theory and practice of using FSL for structural, functional and diffusion image analysis. The course is designed for people at all skill levels, from those with little or no experience …

FSL Diffusion Toolbox Practical. In this practical we will walk you through the steps needed to prepare your diffusion data for analysis. We will also cover diffusion tensor model fitting and …

Plotting time series with FSL-Python (optional) FSL-Python is a virtual environment that FSL uses to run those of its components that were written in the programming language Python. …

Scanning was carried out at the University of Oxford Centre for Clinical Magnetic Resonance Research (OCMR) using a 3T Siemens Trio scanner with a 12-channel head coil. The …

A wrapper script called "cluster", which # invokes "fsl-cluster", can be created like so: # # createFSLWrapper fsl-cluster=cluster import argparse import os import os.path as op import …

Enter the MNI space coordinate of your thalamic activation in mm. Explanation Cortical Zone Definitions References. Tim Behrens, Heidi Johansen-Berg, Dave Flitney Last modified: Thu …

Melodic is the tool in FSL that we use at both the subject and group level to decompose FMRI data into time-courses and spatial maps using ICA. Contents: Running single-subject ICA

Oxford_ASL is an automated command line utility that processes ASL data to produce a calibrated map of resting state tissue perfusion. Typical usage would be: oxford_asl -i …

Thalamic Connectivity Atlas - Explanation This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones defined here.These …