Overview - brain-map.org
An overview of open data, lab resources, analysis tools, and more from the Allen Institute for Brain Science.
Brain Map - brain-map.org
Multiscale datasets and publications uncover how the brain is wired. Explore. Computational Modeling & Theory. Use of brain-wide, circuit-level and cell-level biophysical models, modeling …
Anatomy - brain-map.org
Among our most widely cited resources, these neuroanatomical atlases include mouse brain & spinal cord, and human brain across multiple developmental timepoints. Below are resources …
Transcriptional Landscape of the Brain - brain-map.org - Allen …
This dataset includes single-cell and -nucleus transcriptomic profiles, assayed from human and mouse brain regions. Anatomical specificity is achieved by microdissecting tissue from defined …
Latest Data Release - brain-map.org - Allen Brain Atlas
Map your data against this reference data through a set of three new algorithms: Deep generative mapping, as well as re-trained correlation mapping and hierarchical mapping. Read the full …
Algorithms - brain-map.org
Correlation mapping. Long name: One-step nearest cluster centroid mapping based on correlation. GitHub repository. Short description: Given reference clusters, select the cluster of …
Gene Expression - brain-map.org - Allen Brain Atlas
These open resources explore where genes in the brain are expressed in both global and local context, and how this expression changes during development and in aging and disease. For …
Allen Reference Atlas - Allen Brain Atlas
The Allen Mouse Brain Atlas includes a full-color, high-resolution anatomic reference atlas accompanied by a systematic, hierarchically organized taxonomy of mouse brain structures.
Mouse brain reference atlases & mapping your own data
Aug 16, 2019 · NeuroInfo is a commercial product that MBF has created for mapping the Allen Mouse Brain Reference Atlas anatomical annotations to coronal sections of mouse brain that …
Mapping to Brain region - Allen Brain Map Community Forum
Mar 22, 2024 · Hello everyone, I am trying to map my entire mouse brain MERFISH sections of P4 & P7 to the Allen Brain Atlas and annotate the brain regions. Could anyone clarify the exact …