Aug 29, 2024 · The MEME Suite allows you to discover novel motifs in collections of unaligned nucleotide or protein sequences, and to perform a wide variety of other motif-based analyses. It provides motif discovery algorithms using both probabilistic (MEME) and

Aug 29, 2024 · The MEME Suite Motif-based sequence analysis tools. Posted: 8/29/2024, 8:25:28 PM Notice As of 6:45 PM PDT 2024-08-29 the MEME server system upgrade has been completed. ...

MEME version 5.5.1 (February 2023) New Features and Enhancements. update-sequence-db: Added --purge-only switch. Docker: Added Docker image for ARM architecture (Apple M1 chip) yielding 20x speedup. Added links to allow fasta_databases and tgene_databases to be on the mounted volume.

You can use a background model with MEME in order to normalize for biased distribution of letters and groups of letters in your sequences. A 0-order model adjusts for single letter biases, a 1-order model adjusts for dimer biases (e.g., GC content in DNA sequences), etc.

MEME Suite 5.0.1 Patches. This file gives notes and installation instructions for patches of the MEME Suite version 5.0.1. For new installations you can skip the patching steps by using the pre-patched distribution. The patches should always be installed in order because later patches may depend on changes made in earlier patches.

Aug 29, 2024 · Notice As of 6:45 PM PDT 2024-08-29 the MEME server system upgrade has been completed. You may submit jobs now.

MEME uses an objective function on motifs when refining a motif, and to select the "best" motif from among all the refined motifs obtained from different starting points for EM. MEME supports several choices of objective function, which are described above under the -objfun option.

Oct 6, 2024 · MEME Suite Software. These releases include the complete source code of the MEME Suite which can be compiled to run on OS X or Linux. They can be compiled on a Windows PC using a virtual machine (running Linux) or the Windows Subsystem for Linux.

When this option is available you may upload a file containing motifs in MEME motif format. This includes the outputs generated by MEME and DREME, as well as files you create using the motif conversion scripts or manually following the MEME motif format guidelines.

Aug 29, 2024 · Jobs running: 5 Jobs waiting to run: 0. ... As of 6:45 PM PDT 2024-08-29 the MEME server system upgrade has been completed. You may submit jobs now. ...