Jul 17, 2018 · After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses.

With its version 5.0, ape supports all types of phylogenetic trees and networks. The function read.tree, already present in the first release of ape, can read trees with nodes of degree two (which was not possible before), and the new function read.evonet can read phylogenetic networks from extended Newick format files (Cardona et al., 2008 ...

Jul 17, 2018 · After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a...

The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses. Efforts have been put to improve efficiency, flexibility, support for ‘big data’ (R’s long vectors), ease of use and quality check before a new release. These changes will hopefully make ape a useful software for the study of biodiversity and ev

ape provides functions for reading, writing, manipulating, analysing, and simulating phylogenetic trees and DNA sequences, computing DNA distances, translating into AA sequences, estimating trees with distance-based methods, and a range of methods for …

Jul 17, 2018 · ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics, 35 (3). Retrieved from https://par.nsf.gov/biblio/10090464. …

Feb 1, 2019 · Efforts have been put to improve efficiency, flexibility, support for 'big data' (R's long vectors), ease of use and quality check before a new release. These changes will hopefully make ape a useful software for the study of biodiversity and evolution in a …

After more than fifteen years of existence, the R package ape has continuously grown its contents, and has been used by a growing community of users. The release of version 5.0 has marked a leap towards a modern software for evolutionary analyses.

May 29, 2024 · ape provides functions for reading, writing, manipulating, analysing, and simulating phylogenetic trees and DNA sequences, computing DNA distances, translating into AA sequences, estimating trees with distance-based methods, and a range of methods for comparative analyses and analysis of diversification. Functionalities are also provided for ...

Aug 28, 2020 · ape is a package written in R for the analysis of phylogenetics and evolution. It is used within the community of evolutionary biologists for data analysis and as a framework for the development of new analytical methods.