An introduction to V-pipe. V-pipe is a computational pipeline for processing viral next-generation sequencing data and analyzing mixed virus populations. Get Started with V-pipe

You’ll find a short introduction to V-pipe in the README file at the root of V-pipe. Configuration files. In order to start using V-pipe, you need to provide three things: Samples in a specific …

V-pipe is a bioinformatics pipeline that integrates various computational tools for the analysis of viral high-throughput sequencing data. It supports the reproducible analysis of genomic …

the first tutorial, V-pipe Installation, demonstrates how to use it; All dependencies of V-pipe are automatically downloaded and installed by snakemake from bioconda.

The tutorial demonstrates how to use V-pipe (specifically for SARS-CoV-2 data). V-pipe is continuously updated with improvements and extensions, including on the visualization and …

V-pipe is opensource and released under the permissive Apache 2.0 license. All components used within V-pipe are all licensed under either copyleft or permissive license and freely …

Oct 16, 2023 · “ V-pipe: a computational pipeline for assessing viral genetic diversity from high-throughput data.” Bioinformatics, January. https://doi.org/10.1093/bioinformatics/btab015.

To start using V-pipe, you can now refer to the documentation. We strongly encourage you to check our tutorials, they cover installation of V-pipe and the first steps to get it running on virus …

For further inquiries, you can also contact the V-pipe Dev Team [email protected].

V-pipe: a bioinformatics pipeline for viral sequencing data. cojac: command-line tools for the analysis of co-occurrence of mutations on amplicons.