Filter, plot and explore single-cell RNA-seq data with Scanpy …
Aug 25, 2023 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Inferring single cell trajectories with Scanpy
Dec 8, 2023 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Inferring single cell trajectories with Scanpy (Python)
Apr 7, 2021 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
Clustering 3K PBMCs with Scanpy - Galaxy Training Network
Dec 19, 2019 · Scanpy Inspect and manipulate ( Galaxy version 1.10.2+galaxy1) with the following parameters: param-file “Annotated data matrix”: 3k PBMC with mito annotation …
Newest 'scanpy' Questions - Stack Overflow
Sep 5, 2024 · I'm using scanpy/python to analyze some single-cell RNA-seq data. I want to use sc.pl.umap(show= False) in order to make ax objects, edit them, and combine them accordingly.
Analysis of plant scRNA-Seq Data with Scanpy
Apr 8, 2021 · Training material and practicals for all kinds of single cell analysis (particularly scRNA-seq!).
scanpy - Python importing package as if it is a module - Stack …
Dec 24, 2021 · I just installed this on my backup test ubuntu computer and it works. I did: pip install scanpy in the bash terminal then once it was installed I wrote this test script and ran it: …
python - scanpy highly variable genes - Stack Overflow
Jul 11, 2022 · filtering of highly variable genes using scanpy does not work in Windows. The same command has no issues while working with Mac. sc.pp.highly_variable_genes(adata, layer = …
python - How to add an observation category on scanpy based on …
So the adata.obs (or the adata.var) attribute of the AnnData is a pandas.DataFrame. So you can use them as such. For example, imagine that the adata.obs contains the information on the …
bar chart - scanpy/python : get the proprotion of cells per cluster …
Sep 19, 2023 · I have two groups ('Average' and 'High') of samples. I have the leiden cluster information. I want to get a stacked bar chart for each group with the proportion of cells in each …