IsoformSwitchAnalyzeR is an easy to use R package which enables statistical identification as well as visualization of isoform switches with predicted functional consequences from RNA …

IsoformSwitchAnalyzeR is an easy-to use-R package that enables statistical identification of isoform switches from RNA-seq derived quantification of novel and/or known full-length isoforms.

Identify, Annotate and Visualize Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data

Apr 17, 2020 · In summary, IsoformSwitchAnalyzeR enables annotation of isoforms with intron retention, ORF, NMD sensitivity, coding potential, protein domains and signal peptides (and …

Mar 19, 2020 · （1）导入数据--将前期基础数据导入R中，其中最关键的是Isoform quantification数据。 （2）对样本isoform从多角度进行注释分析； （3）利用转录本注释信息，进行组 …

IsoformSwitchAnalyzeR is an easy to use R package that facilitates statistical identification of isoform switching from RNA-seq derived quantification of novel and/or annotated full-length …

An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data) - kvittingseerup/IsoformSwitchAnalyzeR

Jun 26, 2017 · To detect and characterize temporal and complex isoform switches, we developed the time-series isoform switch (TSIS) R package, which incorporates score schemes from …

By examining isoform-level expression changes, researchers can identify and characterize specific isoforms that may have unique roles in cellular processes, such as isoform-specific …

In IsoformSwitchAnalyzeR: Identify, Annotate and Visualize Alternative Splicing and Isoform Switches with Functional Consequences from both short- and long-read RNA-seq data.