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Feb 20, 2023 · I pulled out the genes at N0, N2 and N6 (the last contained my species, the middle my species cf another species of interest and N0 included the outgroup species). I found that I …

This file effectively replaces the orthogroups in Orthogroups/Orthogroups.tsv from Markov clustering using MCL. N1.txt, N2.tsv, ...: Orthogroups inferred from the gene trees …

Mar 13, 2023 · OrthoFinder 以物种树中的节点（LCA）为标准，寻找有根基因树内由 LCA 中基因进化来的 HOG，对原先 MCL 算法得到 orthogroup 进行细分。输出文件 …

I've discussed this issue with the rest of the team and it's possible that the issue is down to the topology of the species tree which is used to infer the HOGs from each OG tree.

In electronic engineering, a through-silicon via (TSV) or through-chip via is a vertical electrical connection that passes completely through a silicon wafer or die. TSVs are high-performance …

Dec 6, 2021 · 该文件有效地替换了使用 MCL 进行马尔可夫聚类的Orthogroups/Orthogroups.tsv 中的正交群。 N1.txt, N2.tsv, … : Orthogroups 从对应物种树 N1、N2 等物种进化枝的基因树推 …

Aug 10, 2021 · Phylogenetic_Hierarchical_Orthogroups 输出文件以 N0.tsv，N1.txt，N2.tsv，… 为格式。 分别指以物种树 N0，N1，N2，… 节点为标准推断出的Hierarchical Orthogroups（ …

Sep 12, 2023 · Tumor-associated neutrophils (TANs) can be conditioned to become “N2” pro-tumorigenic neutrophils in the tumor microenvironment. TANs have been shown to acquire N2 …

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