
A practical guide to molecular dating - ScienceDirect
Aug 1, 2013 · Estimating divergence times among species or lineages using molecular sequence data, commonly referred to as molecular dating, has now become a commonplace tool for …
Principles of Molecular Dating - SpringerLink
Jan 19, 2021 · Molecular dating uses numerical, semiparametric, or fully parametric methods, combined with independent information about molecular rates or, more commonly, time …
Assessing the relative performance of fast molecular dating …
Dec 3, 2022 · We analyzed 23 empirical phylogenomic datasets to investigate the performance of two commonly employed fast dating methodologies: penalized likelihood (PL), implemented in …
Bayesian molecular dating: opening up the black box - PubMed
The aim of this review is to open the 'black box' of Bayesian molecular dating and have a look at the machinery inside. We explain the components of these dating methods, the important …
Molecular dating requires a set of homologous genetic sequences (all related by descent from a single ancestral sequence), a method for inferring the number of changes that have occurred …
Puzzling rocks and complicated clocks: how to optimize molecular dating …
Sep 10, 2015 · In recent decades, molecular dating has become an important component of phytogeographic studies because the establishment of an evolutionary timescale enables the …
Rates and Rocks: Strengths and Weaknesses of Molecular Dating …
Molecular dating goes beyond standard phylogenetic reconstruction by separating rates of molecular evolution from actual (i.e., calendar) times. Separating rates and times requires …
Confidence intervals in molecular dating by maximum likelihood
Jan 1, 2023 · Molecular dating has been widely used to infer the times of past evolutionary events using molecular sequences. This paper describes three bootstrap methods to infer confidence …
Bayesian Molecular Dating - SpringerLink
Jan 19, 2021 · We explain the main components of Bayesian molecular dating, including the specification of the time prior incorporating fossil calibrations, the specification of the rate prior …
Six Impossible Things before Breakfast: Assumptions, Models, and …
Confidence in molecular dating analyses has grown with the increasing sophistication of the methods. Some problematic cases where molecular dates disagreed with paleontological …