Jul 16, 2024 · Critical Assessment of Massive Data Analysis (CAMDA) runs in collaboration with ISMB, which joins up with ECCB every other year. CAMDA is an established full conference track at ISMB, representing one of its Communities of Special Interests (COSIs). This gives you wide exposure and further opportunities for interaction with colleagues without ...

Jan 30, 2018 · Ever wonder what's growing in that hot spring or glacier?

Jun 14, 2010 · Bismark is not a mere bisulfite alignment application, but it is also a methylation caller at the same time. To perform the methylation calls correctly it needs to know the conversion state of both the bisulfite read and the genome, as this will determine whether we have to look for C->T or G->A substitutions and whether we need to look up- or downstream to determine if …

Sep 29, 2012 · Hello there, I was wondering whether anybody on this list could knows how to run RepeatScout (1.0.5) and RepeatMasker (3.2.8). Basically I have a new genome, and want to use RepeatScout to make a library for RepeatMasker. Here is what I do: build_lmer_table -sequence genome.fa -freq genome.fq RepeatScout -sequence

Jun 28, 2011 · Hi all. I'm wondering if any studies have been done on the statistics of human genomic data. In particular, on the distribution of bases and k-mers in human dna. For example, do G, C, A and T occur with equal frequency among the 3 gigabases? Are there known "long" k-mers that occur with high frequency (I don't care

May 4, 2010 · Pindel can detect variants of any sizes as long as they are not inter-chromosome events. The only thing I worry about is speed.