Eaton lab server guide April 19, 2020 New user setup Assembling a plant genome on google cloud November 24, 2019 gsutils, buckets, instances. Login to HPC passwordless November 19, 2019 Save yourself 30 seconds every day.

Sydney Wells joined the Eaton lab in 2023 as a senior undergraduate. Sydney is interested in plant reproductive variation and is investigating the occurrence of apomixis in Amaranthus palmeri through greenhouse experiments and simulation modeling.

Eaton, D.A.R., Hipp, A., Gonzalez-Rodriguez, A. & J. Cavender-Bares (2015). Historical introgression among the American live oaks and the comparative nature of tests for introgression. Evolution 69(10) 2587-2601.

The Eaton lab combines genomic analyses with field-based experiments and community analyses to understand the role that gene flow and reproductive interference play in shaping Pedicularis evolution. Floral diversity in Pedicularis of the Hengduan Mountains. Replicated evolution of leaf form in Viburnum

In the Eaton lab at Columbia University Dept. of Ecology, Evolution, and Environmental Biology

Eaton-lab HPC instructions December 09, 2018 Notes on using Columbia HPC resources for Eaton lab members. Conda installation guide for multiple kernels August 26, 2018 Setting up Py2, Py3, R, Julia, bash, and RevBayes kernels; Accessing sequence data for reproducible science August 28, 2017 The tools to download sequence data from SRA are ...

Since this subpackage contains very simple modifications that can be quickly added on top of existing trees, we encourage you to share with us any functions you make that may fit in this subpackage! These can be shared via Github at https://github.com/eaton-lab/toytree/discussions

On Habanero Eaton lab members have access to 8Tb of scratch space and about 20 24-core nodes, but these resources are shared and often busy. On Terremoto we have one reserved 24 core node and 6Tb of scratch space, and can access all other shared resources.

# load a toytree from a newick string at a URL utree = toytree. tree ("https://eaton-lab.org/data/Cyathophora.tre") # re-root on internal edge selected using a regex string rtree = utree. root ("~prz") # draw the rooted tree rtree. draw (node_hover = True, node_sizes = 8, tip_labels_align = True);

By Deren Eaton August 17, 2020 Tweet Like. Updated conda installation instructions. Conda is a work in progress, and the best practices evolve quickly. This is my current recommended best practice, aimed at avoiding conflicts among packages, and …