UCSF DOCK 6
The new features of DOCK 6 include: genetic algorithms and de novo design for fragment based ligand searching; additional scoring options during minimization; DOCK 3.5 scoring-including …
DOCK 6.11 User Manual
Nov 14, 2023 · DOCK 6 is an extension of the DOCK 5 code base. It includes the implementation of Hawkins-Cramer-Truhlar GB/SA solvation scoring with salt screening and PB/SA solvation …
Tutorials for DOCK 6.11
Tutorials for DOCK 6.11 . Rizzo et alia Tutorials . NOTE: These tutorials showcase the latest features and best practices from the currently most active DOCK developers. Lab Tutorials. …
DOCK 6 FAQ
Nov 14, 2023 · The latest input from our user community dated January 2014 reports that DOCK version 6.6 was built on SGI machines running IRIX 6.5.23 and MIPSpro compiler version 7.4 …
UCSF DOCK
© 1991-2025 UCSF DOCK team and the UC Regents, Department of Pharmaceutical Chemistry, UCSF. This is not an official UCSF website. The opinions or statements ...
Kuntz Lab Licensing
DOCK 6 is distributed for Unix versions compatible with the MPICH library, Linux, Windows, and MacIntosh OSX systems. DOCK 5 is distributed for Unix versions compatible with the MPICH …
Overview of DOCK
With the release of DOCK 6, we continue to improve the algorithm's ability to predict binding poses by adding new features like force-field scoring enhanced by solvation and receptor …
Tutorial: Generating Spheres
Oct 7, 2023 · This tutorial describes the three steps required to define receptor active sites for DOCK calculations. We study the complex L-Arabinose-Binding Protein bound to L-Arabinose …
UCSF DOCK
DOCK 6.10 This is a release of the version described in references [1] and [2] with the new genetic algorithm DOCK_GA: molecular evolution for ligand design.
UCSF DOCK 3.6
DOCK 3.6 is written in Fortran (and some C); it is an update of DOCK 3.5.54 with many improved features. It maintains compatibility with Flexibase/DB files found on ZINC. Highlights of new …