CIDANE is a novel framework for genome-based transcript reconstruction and quantification. CIDANE is engineered to not only assembly RNA-seq reads ab initio, but to also make use of …

Jan 30, 2016 · We present CIDANE, a novel framework for genome-based transcript reconstruction and quantification from RNA-seq reads. CIDANE assembles transcripts …

CIDANE supports the integrated analysis of RNA-seq and additional gene-boundary data and recovers splice junctions that are invisible to other methods. CIDANE is available at …

Here we present CIDANE, a novel framework that provides major improvements in genome-based transcript reconstruction and quantification from RNA-seq reads over existing tools.

Jan 30, 2016 · We present CIDANE, a novel framework for genome-based transcript reconstruction and quantification from RNA-seq reads. CIDANE assembles transcripts …

We introduce CIDANE, a tool for the assembly and quantification of full-length isoforms from short read RNA-seq data. CIDANE bridges the gap between RNA quantification methods that rely …

Using a technique from large-scale optimization, CIDANE can discover those transcripts using an optional stage of the algorithm that kicks in on-demand when invisible transcripts appear to be …

Here we present CIDANE, a comprehensive tool for genome-based assembly and quantification of transcripts from RNA-seq experiments. The central idea of CIDANE is to trade the ability to …

Jan 30, 2016 · We present CIDANE, a novel framework for genome-based transcript reconstruction and quantification from RNA-seq reads. CIDANE assembles transcripts …

Apr 12, 2015 · We present CIDANE, a novel framework for genome-based transcript reconstruction and quantification from RNA-seq reads. CIDANE assembles transcripts with …