Fundamental and practical approaches for single-cell ATAC-seq …
Assays for transposase-accessible chromatin through high-throughput sequencing (ATAC-seq) are effective tools in the study of genome-wide chromatin accessibility landscapes.
See results only from pmc.ncbi.nlm.nih.govAn optimized ATAC-seq protocol for genome-wide mapping of a…
We have developed this modified ATAC-seq protocol to address this challenge for primary neurons, providing a high-quality and high-resolutio…
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Comprehensive Guide to ATAC-seq Data Analysis
Jan 1, 2025 · ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a method to study genome accessibility. It enables researchers to identify regions of the genome accessible to transcription …
From reads to insight: a hitchhiker’s guide to ATAC-seq data analysis
Feb 3, 2020 · Here, we discuss the major steps in ATAC-seq data analysis, including pre-analysis (quality check and alignment), core analysis (peak calling), and advanced analysis (peak …
- Author: Feng Yan, David R. Powell, David J. Curtis, Nicholas C. Wong
- Estimated Reading Time: 9 mins
- Publish Year: 2020
An optimized ATAC-seq protocol for genome-wide mapping of …
We have developed this modified ATAC-seq protocol to address this challenge for primary neurons, providing a high-quality and high-resolution accessible chromatin profile. This …
Complete Guide to Understanding and Using ATAC-Seq - Active …
ATAC-Seq: Comprehensive Guide to Chromatin Accessibility Profiling
The Assay for Transposase-Accessible Chromatin using high-throughput sequencing (ATAC-seq) is a groundbreaking technique designed to investigate chromatin accessibility and the …
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Assays for transposase-accessible chromatin through high-throughput sequencing (ATAC-seq) are effective tools in the study of genome-wide chromatin accessibility landscapes.
ATAC-seq library construction is performed as previously reported (Bajic et al., 2018; Buenrostro et al., 2013; Corces et al., 2017). Briefly, nuclei are extracted from samples, and the nuclei …
AIAP: A Quality Control and Integrative Analysis Package to …
Assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) is a technique widely used to investigate genome-wide chromatin accessibility. The recently …
ATAC-Seq large fragments - SEQanswers
Feb 25, 2015 · Its the Agilent 2100 Bioanalyzer using the High Sensitivity DNA kit. Its intended for fragments under 1KB but the upper marker is at 10KB so you can see some of the larger …
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