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Single-cell multiomic profiling of human lungs reveals cell-type ...
Nov 9, 2020 · Generation of a human lung single nucleus ATAC-seq and single nucleus RNA-seq datasets reveals candidate cis-regulatory elements that advance knowledge on gene …
- Author: Allen Wang, Joshua Chiou, Olivier B Poirion, Justin Buchanan, Michael J Valdez, Jamie M Verheyden, X...
- Publish Year: 2020
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From reads to insight: a hitchhiker’s guide to ATAC-seq …
Here, we discuss the major steps in ATAC-seq data analysis, including pre-analysis (quality check and alignment), core analysis (peak calling), and advanced analysis (peak differential analysis and annotation, motif …
The accessible promoter-mediated supplementary effect of host …
Jun 14, 2022 · These results provide new insights into the tissue tropism of SARS-CoV-2. Further investigations with additional experiments, especially acquisition and integration analysis of …
CebolaLab/ATAC-seq: Analysis pipeline for ATAC-seq …
A step-by-step pipeline for the analysis of ATAC-seq data (the assay for transposase-accessible chromatin with sequencing), written by the Cebola Lab. The resources used to build this pipeiline are listed at the bottom in the …
Comprehensive Guide to ATAC-seq Data Analysis
Jan 1, 2025 · ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) is a method to study genome accessibility. It enables researchers to identify regions of the genome accessible to transcription …
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Atlas of ACE2 gene expression reveals novel insights into …
We show that mammalian ACE2 gene is deeply conserved at both DNA and peptide levels, suggesting that a broad range of mammals can potentially host SARS-CoV-2. We further …
DYRK1A drives ACE2 and DPP4 expression by altering …
(D) RT-qPCR for ACE2 validates RNA-Seq results and supports partial rescue of ACE2 mRNA transcripts in cells where DYRK1A-WT or DYRK1A-Y321F are reintroduced.
Analytical Approaches for ATAC-seq Data Analysis - PMC
Here, we explain the fundamentals of ATAC-seq data processing, summarize common analysis approaches, and review computational tools to provide recommendations for different …
Genome-wide mapping of insertion ends by high-throughput sequencing allows for multidimensional assays of the regulatory landscape of chromatin with a rel-atively simple …
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